diff --git a/pkg/local_object_storage/metabase/storage_id.go b/pkg/local_object_storage/metabase/storage_id.go
index 4ccb21eba..85c57fc21 100644
--- a/pkg/local_object_storage/metabase/storage_id.go
+++ b/pkg/local_object_storage/metabase/storage_id.go
@@ -8,7 +8,7 @@ import (
 	"git.frostfs.info/TrueCloudLab/frostfs-node/pkg/local_object_storage/internal/metaerr"
 	"git.frostfs.info/TrueCloudLab/frostfs-observability/tracing"
 	oid "git.frostfs.info/TrueCloudLab/frostfs-sdk-go/object/id"
-	"go.etcd.io/bbolt"
+	"github.com/cockroachdb/pebble"
 	"go.opentelemetry.io/otel/attribute"
 	"go.opentelemetry.io/otel/trace"
 )
@@ -57,8 +57,8 @@ func (db *DB) StorageID(ctx context.Context, prm StorageIDPrm) (res StorageIDRes
 		return res, ErrDegradedMode
 	}
 
-	err = db.database.View(func(tx *bbolt.Tx) error {
-		res.id, err = db.storageID(tx, prm.addr)
+	err = db.snapshot(func(s *pebble.Snapshot) error {
+		res.id, err = db.storageID(s, prm.addr)
 
 		return err
 	})
@@ -66,14 +66,11 @@ func (db *DB) StorageID(ctx context.Context, prm StorageIDPrm) (res StorageIDRes
 	return res, metaerr.Wrap(err)
 }
 
-func (db *DB) storageID(tx *bbolt.Tx, addr oid.Address) ([]byte, error) {
-	key := make([]byte, bucketKeySize)
-	smallBucket := tx.Bucket(smallBucketName(addr.Container(), key))
-	if smallBucket == nil {
-		return nil, nil
+func (db *DB) storageID(r pebble.Reader, addr oid.Address) ([]byte, error) {
+	storageID, err := valueSafe(r, smallKey(addr.Container(), addr.Object()))
+	if err != nil {
+		return nil, err
 	}
-
-	storageID := smallBucket.Get(objectKey(addr.Object(), key))
 	if storageID == nil {
 		return nil, nil
 	}
@@ -126,9 +123,28 @@ func (db *DB) UpdateStorageID(ctx context.Context, prm UpdateStorageIDPrm) (res
 		return res, ErrReadOnlyMode
 	}
 
-	err = db.database.Batch(func(tx *bbolt.Tx) error {
-		return setStorageID(tx, prm.addr, prm.id, true)
+	defer db.guard.LockContainerID(prm.addr.Container())()
+
+	err = db.batch(func(b *pebble.Batch) error {
+		return setStorageID(b, prm.addr, prm.id, true)
 	})
 	success = err == nil
 	return res, metaerr.Wrap(err)
 }
+
+// setStorageID for existing objects if they were moved from one
+// storage location to another.
+func setStorageID(b *pebble.Batch, addr oid.Address, id []byte, override bool) error {
+	key := smallKey(addr.Container(), addr.Object())
+	if override {
+		return b.Set(key, id, pebble.Sync)
+	}
+	v, err := valueSafe(b, key)
+	if err != nil {
+		return err
+	}
+	if v == nil {
+		return b.Set(key, id, pebble.Sync)
+	}
+	return nil
+}