diff --git a/cmd/frostfs-cli/modules/control/rebuild_shards.go b/cmd/frostfs-cli/modules/control/rebuild_shards.go
new file mode 100644
index 000000000..e2b408712
--- /dev/null
+++ b/cmd/frostfs-cli/modules/control/rebuild_shards.go
@@ -0,0 +1,88 @@
+package control
+
+import (
+	"fmt"
+
+	rawclient "git.frostfs.info/TrueCloudLab/frostfs-api-go/v2/rpc/client"
+	"git.frostfs.info/TrueCloudLab/frostfs-node/cmd/frostfs-cli/internal/key"
+	commonCmd "git.frostfs.info/TrueCloudLab/frostfs-node/cmd/internal/common"
+	"git.frostfs.info/TrueCloudLab/frostfs-node/pkg/services/control"
+	"github.com/mr-tron/base58"
+	"github.com/spf13/cobra"
+)
+
+const (
+	fillPercentFlag = "fill_percent"
+)
+
+var shardsRebuildCmd = &cobra.Command{
+	Use:   "rebuild",
+	Short: "Rebuild shards",
+	Long:  "Rebuild reclaims storage occupied by dead objects and adjusts the storage structure according to the configuration (for blobovnicza only now)",
+	Run:   shardsRebuild,
+}
+
+func shardsRebuild(cmd *cobra.Command, _ []string) {
+	pk := key.Get(cmd)
+
+	req := &control.StartShardRebuildRequest{
+		Body: &control.StartShardRebuildRequest_Body{
+			Shard_ID:          getShardIDList(cmd),
+			TargetFillPercent: getFillPercentValue(cmd),
+			ConcurrencyLimit:  getConcurrencyValue(cmd),
+		},
+	}
+
+	signRequest(cmd, pk, req)
+
+	cli := getClient(cmd, pk)
+
+	var resp *control.StartShardRebuildResponse
+	var err error
+	err = cli.ExecRaw(func(client *rawclient.Client) error {
+		resp, err = control.StartShardRebuild(client, req)
+		return err
+	})
+	commonCmd.ExitOnErr(cmd, "rpc error: %w", err)
+
+	verifyResponse(cmd, resp.GetSignature(), resp.GetBody())
+
+	var success, failed uint
+	for _, res := range resp.GetBody().GetResults() {
+		if res.GetSuccess() {
+			success++
+			cmd.Printf("Shard %s: OK\n", base58.Encode(res.GetShard_ID()))
+		} else {
+			failed++
+			cmd.Printf("Shard %s: failed with error %q\n", base58.Encode(res.GetShard_ID()), res.GetError())
+		}
+	}
+	cmd.Printf("Total: %d success, %d failed\n", success, failed)
+}
+
+func getFillPercentValue(cmd *cobra.Command) uint32 {
+	v, _ := cmd.Flags().GetUint32(fillPercentFlag)
+	if v <= 0 || v > 100 {
+		commonCmd.ExitOnErr(cmd, "invalid fill_percent value", fmt.Errorf("fill_percent value must be (0, 100], current value: %d", v))
+	}
+	return v
+}
+
+func getConcurrencyValue(cmd *cobra.Command) uint32 {
+	v, _ := cmd.Flags().GetUint32(concurrencyFlag)
+	if v <= 0 || v > 10000 {
+		commonCmd.ExitOnErr(cmd, "invalid concurrency value", fmt.Errorf("concurrency value must be (0, 10 000], current value: %d", v))
+	}
+	return v
+}
+
+func initControlShardRebuildCmd() {
+	initControlFlags(shardsRebuildCmd)
+
+	flags := shardsRebuildCmd.Flags()
+	flags.StringSlice(shardIDFlag, nil, "List of shard IDs in base58 encoding")
+	flags.Bool(shardAllFlag, false, "Process all shards")
+	flags.Uint32(fillPercentFlag, 80, "Target fill percent to reclaim space")
+	flags.Uint32(concurrencyFlag, 20, "Maximum count of concurrently rebuilding files")
+	setShardModeCmd.MarkFlagsMutuallyExclusive(shardIDFlag, shardAllFlag)
+}
diff --git a/cmd/frostfs-cli/modules/control/shards.go b/cmd/frostfs-cli/modules/control/shards.go
index d8198c426..d6c2a0b9b 100644
--- a/cmd/frostfs-cli/modules/control/shards.go
+++ b/cmd/frostfs-cli/modules/control/shards.go
@@ -28,4 +28,5 @@ func initControlShardsCmd() {
 	initControlDoctorCmd()
 	initControlShardsWritecacheCmd()
 	initControlShardsDetachCmd()
+	initControlShardRebuildCmd()
 }
diff --git a/pkg/local_object_storage/engine/rebuild.go b/pkg/local_object_storage/engine/rebuild.go
new file mode 100644
index 000000000..3970aae89
--- /dev/null
+++ b/pkg/local_object_storage/engine/rebuild.go
@@ -0,0 +1,90 @@
+package engine
+
+import (
+	"context"
+	"sync"
+
+	"git.frostfs.info/TrueCloudLab/frostfs-node/pkg/local_object_storage/shard"
+	"git.frostfs.info/TrueCloudLab/frostfs-observability/tracing"
+	"go.opentelemetry.io/otel/attribute"
+	"go.opentelemetry.io/otel/trace"
+	"golang.org/x/sync/errgroup"
+)
+
+type RebuildPrm struct {
+	ShardIDs          []*shard.ID
+	ConcurrencyLimit  uint32
+	TargetFillPercent uint32
+}
+
+type ShardRebuildResult struct {
+	ShardID  *shard.ID
+	Success  bool
+	ErrorMsg string
+}
+
+type RebuildRes struct {
+	ShardResults []ShardRebuildResult
+}
+
+func (e *StorageEngine) Rebuild(ctx context.Context, prm RebuildPrm) (RebuildRes, error) {
+	ctx, span := tracing.StartSpanFromContext(ctx, "StorageEngine.Rebuild",
+		trace.WithAttributes(
+			attribute.Int("shard_id_count", len(prm.ShardIDs)),
+			attribute.Int64("target_fill_percent", int64(prm.TargetFillPercent)),
+			attribute.Int64("concurrency_limit", int64(prm.ConcurrencyLimit)),
+		))
+	defer span.End()
+
+	res := RebuildRes{
+		ShardResults: make([]ShardRebuildResult, 0, len(prm.ShardIDs)),
+	}
+	resGuard := &sync.Mutex{}
+
+	limiter := newRebuildLimiter(prm.ConcurrencyLimit)
+
+	eg, egCtx := errgroup.WithContext(ctx)
+	for _, shardID := range prm.ShardIDs {
+		eg.Go(func() error {
+			e.mtx.RLock()
+			sh, ok := e.shards[shardID.String()]
+			e.mtx.RUnlock()
+
+			if !ok {
+				resGuard.Lock()
+				defer resGuard.Unlock()
+				res.ShardResults = append(res.ShardResults, ShardRebuildResult{
+					ShardID:  shardID,
+					ErrorMsg: errShardNotFound.Error(),
+				})
+				return nil
+			}
+
+			err := sh.ScheduleRebuild(egCtx, shard.RebuildPrm{
+				ConcurrencyLimiter: limiter,
+				TargetFillPercent:  prm.TargetFillPercent,
+			})
+
+			resGuard.Lock()
+			defer resGuard.Unlock()
+
+			if err != nil {
+				res.ShardResults = append(res.ShardResults, ShardRebuildResult{
+					ShardID:  shardID,
+					ErrorMsg: err.Error(),
+				})
+			} else {
+				res.ShardResults = append(res.ShardResults, ShardRebuildResult{
+					ShardID: shardID,
+					Success: true,
+				})
+			}
+			return nil
+		})
+	}
+
+	if err := eg.Wait(); err != nil {
+		return RebuildRes{}, err
+	}
+	return res, nil
+}
diff --git a/pkg/local_object_storage/shard/rebuild.go b/pkg/local_object_storage/shard/rebuild.go
index 998fcf08b..f8051999e 100644
--- a/pkg/local_object_storage/shard/rebuild.go
+++ b/pkg/local_object_storage/shard/rebuild.go
@@ -10,7 +10,10 @@ import (
 	"git.frostfs.info/TrueCloudLab/frostfs-node/pkg/local_object_storage/blobstor/common"
 	meta "git.frostfs.info/TrueCloudLab/frostfs-node/pkg/local_object_storage/metabase"
 	"git.frostfs.info/TrueCloudLab/frostfs-node/pkg/util/logger"
+	"git.frostfs.info/TrueCloudLab/frostfs-observability/tracing"
 	oid "git.frostfs.info/TrueCloudLab/frostfs-sdk-go/object/id"
+	"go.opentelemetry.io/otel/attribute"
+	"go.opentelemetry.io/otel/trace"
 	"go.uber.org/zap"
 )
 
@@ -171,3 +174,33 @@ func (u *mbStorageIDUpdate) UpdateStorageID(ctx context.Context, addr oid.Addres
 	_, err := u.mb.UpdateStorageID(ctx, prm)
 	return err
 }
+
+type RebuildPrm struct {
+	ConcurrencyLimiter RebuildWorkerLimiter
+	TargetFillPercent  uint32
+}
+
+func (s *Shard) ScheduleRebuild(ctx context.Context, p RebuildPrm) error {
+	ctx, span := tracing.StartSpanFromContext(ctx, "Shard.ScheduleRebuild",
+		trace.WithAttributes(
+			attribute.String("shard_id", s.ID().String()),
+			attribute.Int64("target_fill_percent", int64(p.TargetFillPercent)),
+		))
+	defer span.End()
+
+	s.m.RLock()
+	defer s.m.RUnlock()
+
+	if s.info.Mode.ReadOnly() {
+		return ErrReadOnlyMode
+	}
+	if s.info.Mode.NoMetabase() {
+		return ErrDegradedMode
+	}
+
+	return s.rb.ScheduleRebuild(ctx, p.ConcurrencyLimiter, common.RebuildAction{
+		SchemaChange:     true,
+		FillPercent:      true,
+		FillPercentValue: int(p.TargetFillPercent),
+	})
+}
diff --git a/pkg/services/control/rpc.go b/pkg/services/control/rpc.go
index a90e58a65..80aece008 100644
--- a/pkg/services/control/rpc.go
+++ b/pkg/services/control/rpc.go
@@ -30,6 +30,7 @@ const (
 	rpcSealWriteCache                    = "SealWriteCache"
 	rpcListTargetsLocalOverrides         = "ListTargetsLocalOverrides"
 	rpcDetachShards                      = "DetachShards"
+	rpcStartShardRebuild                 = "StartShardRebuild"
 )
 
 // HealthCheck executes ControlService.HealthCheck RPC.
@@ -361,3 +362,16 @@ func DetachShards(
 
 	return wResp.message, nil
 }
+
+// StartShardRebuild executes ControlService.StartShardRebuild RPC.
+func StartShardRebuild(cli *client.Client, req *StartShardRebuildRequest, opts ...client.CallOption) (*StartShardRebuildResponse, error) {
+	wResp := newResponseWrapper[StartShardRebuildResponse]()
+	wReq := &requestWrapper{m: req}
+
+	err := client.SendUnary(cli, common.CallMethodInfoUnary(serviceName, rpcStartShardRebuild), wReq, wResp, opts...)
+	if err != nil {
+		return nil, err
+	}
+
+	return wResp.message, nil
+}
diff --git a/pkg/services/control/server/rebuild.go b/pkg/services/control/server/rebuild.go
new file mode 100644
index 000000000..6ddfb8bf4
--- /dev/null
+++ b/pkg/services/control/server/rebuild.go
@@ -0,0 +1,59 @@
+package control
+
+import (
+	"context"
+	"fmt"
+
+	"git.frostfs.info/TrueCloudLab/frostfs-node/pkg/local_object_storage/engine"
+	"git.frostfs.info/TrueCloudLab/frostfs-node/pkg/services/control"
+	"git.frostfs.info/TrueCloudLab/frostfs-node/pkg/services/control/server/ctrlmessage"
+	"google.golang.org/grpc/codes"
+	"google.golang.org/grpc/status"
+)
+
+func (s *Server) StartShardRebuild(ctx context.Context, req *control.StartShardRebuildRequest) (*control.StartShardRebuildResponse, error) {
+	err := s.isValidRequest(req)
+	if err != nil {
+		return nil, status.Error(codes.PermissionDenied, err.Error())
+	}
+
+	if req.GetBody().GetConcurrencyLimit() == 0 || req.GetBody().GetConcurrencyLimit() > 10000 {
+		return nil, status.Error(codes.InvalidArgument, fmt.Sprintf("concurrency limit must be in range (0; 10 000], current value %d", req.GetBody().GetConcurrencyLimit()))
+	}
+
+	if req.GetBody().GetTargetFillPercent() == 0 || req.GetBody().GetTargetFillPercent() > 100 {
+		return nil, status.Error(codes.InvalidArgument, fmt.Sprintf("fill percent must be in range (0; 100], current value %d", req.GetBody().GetTargetFillPercent()))
+	}
+
+	prm := engine.RebuildPrm{
+		ShardIDs:          s.getShardIDList(req.GetBody().GetShard_ID()),
+		ConcurrencyLimit:  req.GetBody().GetConcurrencyLimit(),
+		TargetFillPercent: req.GetBody().GetTargetFillPercent(),
+	}
+
+	res, err := s.s.Rebuild(ctx, prm)
+	if err != nil {
+		return nil, status.Error(codes.Internal, err.Error())
+	}
+
+	resp := &control.StartShardRebuildResponse{Body: &control.StartShardRebuildResponse_Body{}}
+	for _, r := range res.ShardResults {
+		if r.Success {
+			resp.Body.Results = append(resp.GetBody().GetResults(), control.StartShardRebuildResponse_Body_Status{
+				Shard_ID: *r.ShardID,
+				Success:  true,
+			})
+		} else {
+			resp.Body.Results = append(resp.GetBody().GetResults(), control.StartShardRebuildResponse_Body_Status{
+				Shard_ID: *r.ShardID,
+				Error:    r.ErrorMsg,
+			})
+		}
+	}
+
+	err = ctrlmessage.Sign(s.key, resp)
+	if err != nil {
+		return nil, err
+	}
+	return resp, nil
+}
diff --git a/pkg/services/control/service.proto b/pkg/services/control/service.proto
index d6639cb48..04994328a 100644
--- a/pkg/services/control/service.proto
+++ b/pkg/services/control/service.proto
@@ -91,6 +91,9 @@ service ControlService {
 
   // DetachShards detaches and closes shards.
   rpc DetachShards(DetachShardsRequest) returns (DetachShardsResponse);
+
+  // StartShardRebuild starts shard rebuild process.
+  rpc StartShardRebuild(StartShardRebuildRequest) returns (StartShardRebuildResponse);
 }
 
 // Health check request.
@@ -699,3 +702,29 @@ message DetachShardsResponse {
 
   Signature signature = 2;
 }
+
+message StartShardRebuildRequest {
+  message Body {
+    repeated bytes shard_ID = 1;
+    uint32 target_fill_percent = 2;
+    uint32 concurrency_limit = 3;
+  }
+
+  Body body = 1;
+  Signature signature = 2;
+}
+
+message StartShardRebuildResponse {
+  message Body {
+    message Status {
+      bytes shard_ID = 1;
+      bool success = 2;
+      string error = 3;
+    }
+    repeated Status results = 1;
+  }
+
+  Body body = 1;
+
+  Signature signature = 2;
+}
diff --git a/pkg/services/control/service_frostfs.pb.go b/pkg/services/control/service_frostfs.pb.go
index eb0d95c64..019cac290 100644
Binary files a/pkg/services/control/service_frostfs.pb.go and b/pkg/services/control/service_frostfs.pb.go differ
diff --git a/pkg/services/control/service_grpc.pb.go b/pkg/services/control/service_grpc.pb.go
index fa9de974a..f5cfefa85 100644
Binary files a/pkg/services/control/service_grpc.pb.go and b/pkg/services/control/service_grpc.pb.go differ