diff --git a/CHANGELOG.md b/CHANGELOG.md
index 0cc9a40b8..25e1114fa 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -30,6 +30,7 @@ Changelog for NeoFS Node
 - Losing meta information on request forwarding (#2040)
 - Assembly process triggered by a request with a bearer token (#2040)
 - Losing locking context after metabase resync (#1502)
+- Removing all trees by container ID if tree ID is empty in `pilorama.Forest.TreeDrop` (#1940)
 
 ### Removed
 ### Updated
diff --git a/cmd/neofs-node/tree.go b/cmd/neofs-node/tree.go
index e36d67303..5971d4594 100644
--- a/cmd/neofs-node/tree.go
+++ b/cmd/neofs-node/tree.go
@@ -73,6 +73,7 @@ func initTreeService(c *cfg) {
 		ev := e.(containerEvent.DeleteSuccess)
 
 		// This is executed asynchronously, so we don't care about the operation taking some time.
+		c.log.Debug("removing all trees for container", zap.Stringer("cid", ev.ID))
 		err := c.treeService.DropTree(context.Background(), ev.ID, "")
 		if err != nil && !errors.Is(err, pilorama.ErrTreeNotFound) {
 			// Ignore pilorama.ErrTreeNotFound but other errors, including shard.ErrReadOnly, should be logged.
diff --git a/pkg/local_object_storage/pilorama/boltdb.go b/pkg/local_object_storage/pilorama/boltdb.go
index 8faf05bfd..32827bde4 100644
--- a/pkg/local_object_storage/pilorama/boltdb.go
+++ b/pkg/local_object_storage/pilorama/boltdb.go
@@ -627,6 +627,17 @@ func (t *boltForest) TreeGetOpLog(cid cidSDK.ID, treeID string, height uint64) (
 // TreeDrop implements the pilorama.Forest interface.
 func (t *boltForest) TreeDrop(cid cidSDK.ID, treeID string) error {
 	return t.db.Batch(func(tx *bbolt.Tx) error {
+		if treeID == "" {
+			c := tx.Cursor()
+			prefix := []byte(cid.EncodeToString())
+			for k, _ := c.Seek(prefix); k != nil && bytes.HasPrefix(k, prefix); k, _ = c.Next() {
+				err := tx.DeleteBucket(k)
+				if err != nil {
+					return err
+				}
+			}
+			return nil
+		}
 		err := tx.DeleteBucket(bucketName(cid, treeID))
 		if errors.Is(err, bbolt.ErrBucketNotFound) {
 			return ErrTreeNotFound
diff --git a/pkg/local_object_storage/pilorama/forest.go b/pkg/local_object_storage/pilorama/forest.go
index ba765bd35..4efc20d8d 100644
--- a/pkg/local_object_storage/pilorama/forest.go
+++ b/pkg/local_object_storage/pilorama/forest.go
@@ -183,13 +183,21 @@ func (f *memoryForest) TreeGetOpLog(cid cidSDK.ID, treeID string, height uint64)
 
 // TreeDrop implements the pilorama.Forest interface.
 func (f *memoryForest) TreeDrop(cid cidSDK.ID, treeID string) error {
-	fullID := cid.String() + "/" + treeID
-	_, ok := f.treeMap[fullID]
-	if !ok {
-		return ErrTreeNotFound
+	cidStr := cid.String()
+	if treeID == "" {
+		for k := range f.treeMap {
+			if strings.HasPrefix(k, cidStr) {
+				delete(f.treeMap, k)
+			}
+		}
+	} else {
+		fullID := cidStr + "/" + treeID
+		_, ok := f.treeMap[fullID]
+		if !ok {
+			return ErrTreeNotFound
+		}
+		delete(f.treeMap, fullID)
 	}
-
-	delete(f.treeMap, fullID)
 	return nil
 }
 
diff --git a/pkg/local_object_storage/pilorama/forest_test.go b/pkg/local_object_storage/pilorama/forest_test.go
index 4144a5f48..984284bf4 100644
--- a/pkg/local_object_storage/pilorama/forest_test.go
+++ b/pkg/local_object_storage/pilorama/forest_test.go
@@ -180,14 +180,26 @@ func TestForest_TreeDrop(t *testing.T) {
 }
 
 func testForestTreeDrop(t *testing.T, s Forest) {
-	cid := cidtest.ID()
+	const cidsSize = 3
+	var cids [cidsSize]cidSDK.ID
+
+	for i := range cids {
+		cids[i] = cidtest.ID()
+	}
+	cid := cids[0]
 
 	t.Run("return nil if not found", func(t *testing.T) {
 		require.ErrorIs(t, s.TreeDrop(cid, "123"), ErrTreeNotFound)
 	})
 
+	require.NoError(t, s.TreeDrop(cid, ""))
+
 	trees := []string{"tree1", "tree2"}
-	d := CIDDescriptor{cid, 0, 1}
+	var descs [cidsSize]CIDDescriptor
+	for i := range descs {
+		descs[i] = CIDDescriptor{cids[i], 0, 1}
+	}
+	d := descs[0]
 	for i := range trees {
 		_, err := s.TreeAddByPath(d, trees[i], AttributeFilename, []string{"path"},
 			[]KeyValue{{Key: "TreeName", Value: []byte(trees[i])}})
@@ -202,6 +214,28 @@ func testForestTreeDrop(t *testing.T, s Forest) {
 
 	_, err = s.TreeGetByPath(cid, trees[1], AttributeFilename, []string{"path"}, true)
 	require.NoError(t, err)
+
+	for j := range descs {
+		for i := range trees {
+			_, err := s.TreeAddByPath(descs[j], trees[i], AttributeFilename, []string{"path"},
+				[]KeyValue{{Key: "TreeName", Value: []byte(trees[i])}})
+			require.NoError(t, err)
+		}
+	}
+	list, err := s.TreeList(cid)
+	require.NotEmpty(t, list)
+
+	require.NoError(t, s.TreeDrop(cid, ""))
+
+	list, err = s.TreeList(cid)
+	require.NoError(t, err)
+	require.Empty(t, list)
+
+	for j := 1; j < len(cids); j++ {
+		list, err = s.TreeList(cids[j])
+		require.NoError(t, err)
+		require.Equal(t, len(list), len(trees))
+	}
 }
 
 func TestForest_TreeAdd(t *testing.T) {
diff --git a/pkg/local_object_storage/pilorama/interface.go b/pkg/local_object_storage/pilorama/interface.go
index 7426ca11d..274e793b6 100644
--- a/pkg/local_object_storage/pilorama/interface.go
+++ b/pkg/local_object_storage/pilorama/interface.go
@@ -35,6 +35,7 @@ type Forest interface {
 	TreeGetOpLog(cid cidSDK.ID, treeID string, height uint64) (Move, error)
 	// TreeDrop drops a tree from the database.
 	// If the tree is not found, ErrTreeNotFound should be returned.
+	// In case of empty treeID drops all trees related to container.
 	TreeDrop(cid cidSDK.ID, treeID string) error
 	// TreeList returns all the tree IDs that have been added to the
 	// passed container ID. Nil slice should be returned if no tree found.
diff --git a/pkg/services/tree/sync.go b/pkg/services/tree/sync.go
index 8b964c186..9fa6829d2 100644
--- a/pkg/services/tree/sync.go
+++ b/pkg/services/tree/sync.go
@@ -295,7 +295,7 @@ func (s *Service) syncLoop(ctx context.Context) {
 			for cnr := range s.cnrMap {
 				s.log.Debug("removing redundant trees...", zap.Stringer("cid", cnr))
 
-				err = s.DropTree(ctx, cnr, "") // TODO: #1940 drop all the trees here
+				err = s.DropTree(ctx, cnr, "")
 				if err != nil {
 					s.log.Error("could not remove redundant tree",
 						zap.Stringer("cid", cnr),