diff --git a/pkg/local_object_storage/metabase/upgrade.go b/pkg/local_object_storage/metabase/upgrade.go
index e9abd746c..f677dcf8e 100644
--- a/pkg/local_object_storage/metabase/upgrade.go
+++ b/pkg/local_object_storage/metabase/upgrade.go
@@ -27,6 +27,10 @@ const (
 
 var updates = map[uint64]func(ctx context.Context, db *bbolt.DB, log func(a ...any)) error{
 	2: upgradeFromV2ToV3,
+	3: func(_ context.Context, _ *bbolt.DB, log func(a ...any)) error {
+		log("metabase already upgraded")
+		return nil
+	},
 }
 
 func Upgrade(ctx context.Context, path string, compact bool, log func(a ...any)) error {
@@ -86,6 +90,7 @@ func compactDB(db *bbolt.DB) error {
 	}
 	dst, err := bbolt.Open(tmpFileName, f.Mode(), &bbolt.Options{
 		Timeout: 100 * time.Millisecond,
+		NoSync:  true,
 	})
 	if err != nil {
 		return fmt.Errorf("can't open new metabase to compact: %w", err)
@@ -93,6 +98,9 @@ func compactDB(db *bbolt.DB) error {
 	if err := bbolt.Compact(dst, db, compactMaxTxSize); err != nil {
 		return fmt.Errorf("compact metabase: %w", errors.Join(err, dst.Close(), os.Remove(tmpFileName)))
 	}
+	if err := dst.Sync(); err != nil {
+		return fmt.Errorf("sync compacted metabase: %w", errors.Join(err, os.Remove(tmpFileName)))
+	}
 	if err := dst.Close(); err != nil {
 		return fmt.Errorf("close compacted metabase: %w", errors.Join(err, os.Remove(tmpFileName)))
 	}
@@ -369,8 +377,7 @@ func dropBucketsByPrefix(ctx context.Context, db *bbolt.DB, prefix []byte, log f
 			log("deleting buckets completed with an error:", err)
 			return err
 		}
-		if count += uint64(len(keys)); count%upgradeLogFrequency == 0 {
-			log("deleted", count, "buckets")
-		}
+		count += uint64(len(keys))
+		log("deleted", count, "buckets")
 	}
 }