diff --git a/pkg/local_object_storage/metabase/v2/put.go b/pkg/local_object_storage/metabase/v2/put.go
index ce6a1e7d3..13ac704bf 100644
--- a/pkg/local_object_storage/metabase/v2/put.go
+++ b/pkg/local_object_storage/metabase/v2/put.go
@@ -18,7 +18,10 @@ type (
 	}
 )
 
-var ErrUnknownObjectType = errors.New("unknown object type")
+var (
+	ErrUnknownObjectType          = errors.New("unknown object type")
+	ErrIncorrectBlobovniczaUpdate = errors.New("updating blobovnicza id on object without it")
+)
 
 // Put saves object header in metabase. Object payload expected to be cut.
 // Big objects have nil blobovniczaID.
@@ -37,6 +40,13 @@ func (db *DB) put(tx *bbolt.Tx, obj *object.Object, id *blobovnicza.ID, isParent
 	// most right child and split header overlap parent so we have to
 	// check if object exists to not overwrite it twice
 	if exists {
+		// when storage engine moves small objects from one blobovniczaID
+		// to another, then it calls metabase.Put method with new blobovniczaID
+		// and this code should be triggered.
+		if !isParent && id != nil {
+			return updateBlobovniczaID(tx, obj.Address(), id)
+		}
+
 		return nil
 	}
 
@@ -268,3 +278,22 @@ func decodeList(data []byte) (lst [][]byte, err error) {
 
 	return lst, nil
 }
+
+// updateBlobovniczaID for existing objects if they were moved from from
+// one blobovnicza to another.
+func updateBlobovniczaID(tx *bbolt.Tx, addr *objectSDK.Address, id *blobovnicza.ID) error {
+	bkt := tx.Bucket(smallBucketName(addr.ContainerID()))
+	if bkt == nil {
+		// if object exists, don't have blobovniczaID and we want to update it
+		// then ignore, this should never happen
+		return ErrIncorrectBlobovniczaUpdate
+	}
+
+	objectKey := objectKey(addr.ObjectID())
+
+	if len(bkt.Get(objectKey)) == 0 {
+		return ErrIncorrectBlobovniczaUpdate
+	}
+
+	return bkt.Put(objectKey, *id)
+}
diff --git a/pkg/local_object_storage/metabase/v2/put_test.go b/pkg/local_object_storage/metabase/v2/put_test.go
new file mode 100644
index 000000000..0e140b2b2
--- /dev/null
+++ b/pkg/local_object_storage/metabase/v2/put_test.go
@@ -0,0 +1,48 @@
+package meta_test
+
+import (
+	"testing"
+
+	"github.com/nspcc-dev/neofs-node/pkg/local_object_storage/blobovnicza"
+	"github.com/stretchr/testify/require"
+)
+
+func TestDB_PutBlobovnicaUpdate(t *testing.T) {
+	db := newDB(t)
+	defer releaseDB(db)
+
+	raw1 := generateRawObject(t)
+	blobovniczaID := blobovnicza.ID{1, 2, 3, 4}
+
+	// put one object with blobovniczaID
+	err := db.Put(raw1.Object(), &blobovniczaID)
+	require.NoError(t, err)
+
+	fetchedBlobovniczaID, err := db.IsSmall(raw1.Object().Address())
+	require.NoError(t, err)
+	require.Equal(t, &blobovniczaID, fetchedBlobovniczaID)
+
+	t.Run("update blobovniczaID", func(t *testing.T) {
+		newID := blobovnicza.ID{5, 6, 7, 8}
+
+		err := db.Put(raw1.Object(), &newID)
+		require.NoError(t, err)
+
+		fetchedBlobovniczaID, err := db.IsSmall(raw1.Object().Address())
+		require.NoError(t, err)
+		require.Equal(t, &newID, fetchedBlobovniczaID)
+	})
+
+	t.Run("update blobovniczaID on bad object", func(t *testing.T) {
+		raw2 := generateRawObject(t)
+		err := db.Put(raw2.Object(), nil)
+		require.NoError(t, err)
+
+		fetchedBlobovniczaID, err := db.IsSmall(raw2.Object().Address())
+		require.NoError(t, err)
+		require.Nil(t, fetchedBlobovniczaID)
+
+		err = db.Put(raw2.Object(), &blobovniczaID)
+		require.Error(t, err)
+	})
+}