diff --git a/cmd/frostfs-node/config/tree/config.go b/cmd/frostfs-node/config/tree/config.go
index 8a8919999..da877791e 100644
--- a/cmd/frostfs-node/config/tree/config.go
+++ b/cmd/frostfs-node/config/tree/config.go
@@ -10,6 +10,8 @@ import (
 
 const (
 	subsection = "tree"
+
+	SyncBatchSizeDefault = 1000
 )
 
 // TreeConfig is a wrapper over "tree" config section
@@ -74,6 +76,17 @@ func (c TreeConfig) SyncInterval() time.Duration {
 	return config.DurationSafe(c.cfg, "sync_interval")
 }
 
+// SyncBatchSize returns the value of "sync_batch_size"
+// config parameter from the "tree" section.
+//
+// Returns `SyncBatchSizeDefault` if config value is not specified.
+func (c TreeConfig) SyncBatchSize() int {
+	if v := config.IntSafe(c.cfg, "sync_batch_size"); v > 0 {
+		return int(v)
+	}
+	return SyncBatchSizeDefault
+}
+
 // AuthorizedKeys parses and returns an array of "authorized_keys" config
 // parameter from "tree" section.
 //
diff --git a/cmd/frostfs-node/config/tree/config_test.go b/cmd/frostfs-node/config/tree/config_test.go
index 285ea0725..6628b8878 100644
--- a/cmd/frostfs-node/config/tree/config_test.go
+++ b/cmd/frostfs-node/config/tree/config_test.go
@@ -44,6 +44,7 @@ func TestTreeSection(t *testing.T) {
 		require.Equal(t, 32, treeSec.ReplicationWorkerCount())
 		require.Equal(t, 5*time.Second, treeSec.ReplicationTimeout())
 		require.Equal(t, time.Hour, treeSec.SyncInterval())
+		require.Equal(t, 2000, treeSec.SyncBatchSize())
 		require.Equal(t, expectedKeys, treeSec.AuthorizedKeys())
 	}
 
diff --git a/cmd/frostfs-node/tree.go b/cmd/frostfs-node/tree.go
index f188e2fbc..a92979daf 100644
--- a/cmd/frostfs-node/tree.go
+++ b/cmd/frostfs-node/tree.go
@@ -62,6 +62,7 @@ func initTreeService(c *cfg) {
 		tree.WithReplicationTimeout(treeConfig.ReplicationTimeout()),
 		tree.WithReplicationChannelCapacity(treeConfig.ReplicationChannelCapacity()),
 		tree.WithReplicationWorkerCount(treeConfig.ReplicationWorkerCount()),
+		tree.WithSyncBatchSize(treeConfig.SyncBatchSize()),
 		tree.WithAuthorizedKeys(treeConfig.AuthorizedKeys()),
 		tree.WithMetrics(c.metricsCollector.TreeService()),
 		tree.WithAPELocalOverrideStorage(c.cfgObject.cfgAccessPolicyEngine.accessPolicyEngine.LocalStorage()),
diff --git a/config/example/node.env b/config/example/node.env
index 3979eb18f..e21328b60 100644
--- a/config/example/node.env
+++ b/config/example/node.env
@@ -31,6 +31,7 @@ FROSTFS_TREE_REPLICATION_CHANNEL_CAPACITY=32
 FROSTFS_TREE_REPLICATION_WORKER_COUNT=32
 FROSTFS_TREE_REPLICATION_TIMEOUT=5s
 FROSTFS_TREE_SYNC_INTERVAL=1h
+FROSTFS_TREE_SYNC_BATCH_SIZE=2000
 FROSTFS_TREE_AUTHORIZED_KEYS="0397d207ea77909f7d66fa6f36d08daae22ace672be7ea4f53513484dde8a142a0 02053819235c20d784132deba10bb3061629e3a5c819a039ef091841d9d35dad56"
 
 # gRPC section
diff --git a/config/example/node.json b/config/example/node.json
index 1ea28de6c..ac7125949 100644
--- a/config/example/node.json
+++ b/config/example/node.json
@@ -69,6 +69,7 @@
     "replication_worker_count": 32,
     "replication_timeout": "5s",
     "sync_interval": "1h",
+    "sync_batch_size": 2000,
     "authorized_keys": [
       "0397d207ea77909f7d66fa6f36d08daae22ace672be7ea4f53513484dde8a142a0",
       "02053819235c20d784132deba10bb3061629e3a5c819a039ef091841d9d35dad56"
diff --git a/config/example/node.yaml b/config/example/node.yaml
index 4a418dfcb..d547f5cee 100644
--- a/config/example/node.yaml
+++ b/config/example/node.yaml
@@ -59,6 +59,7 @@ tree:
   replication_channel_capacity: 32
   replication_timeout: 5s
   sync_interval: 1h
+  sync_batch_size: 2000
   authorized_keys:  # list of hex-encoded public keys that have rights to use the Tree Service with frostfs-cli
     - 0397d207ea77909f7d66fa6f36d08daae22ace672be7ea4f53513484dde8a142a0
     - 02053819235c20d784132deba10bb3061629e3a5c819a039ef091841d9d35dad56
diff --git a/pkg/local_object_storage/engine/tree.go b/pkg/local_object_storage/engine/tree.go
index 39122628f..6bb5e3a41 100644
--- a/pkg/local_object_storage/engine/tree.go
+++ b/pkg/local_object_storage/engine/tree.go
@@ -110,6 +110,34 @@ func (e *StorageEngine) TreeApply(ctx context.Context, cnr cidSDK.ID, treeID str
 	return nil
 }
 
+// TreeApplyBatch implements the pilorama.Forest interface.
+func (e *StorageEngine) TreeApplyBatch(ctx context.Context, cnr cidSDK.ID, treeID string, m []*pilorama.Move) error {
+	ctx, span := tracing.StartSpanFromContext(ctx, "StorageEngine.TreeApplyBatch",
+		trace.WithAttributes(
+			attribute.String("container_id", cnr.EncodeToString()),
+			attribute.String("tree_id", treeID),
+		),
+	)
+	defer span.End()
+
+	index, lst, err := e.getTreeShard(ctx, cnr, treeID)
+	if err != nil && !errors.Is(err, pilorama.ErrTreeNotFound) {
+		return err
+	}
+
+	err = lst[index].TreeApplyBatch(ctx, cnr, treeID, m)
+	if err != nil {
+		if !errors.Is(err, shard.ErrReadOnlyMode) && err != shard.ErrPiloramaDisabled {
+			e.reportShardError(lst[index], "can't perform `TreeApplyBatch`", err,
+				zap.Stringer("cid", cnr),
+				zap.String("tree", treeID),
+				zap.String("trace_id", tracingPkg.GetTraceID(ctx)))
+		}
+		return err
+	}
+	return nil
+}
+
 // TreeGetByPath implements the pilorama.Forest interface.
 func (e *StorageEngine) TreeGetByPath(ctx context.Context, cid cidSDK.ID, treeID string, attr string, path []string, latest bool) ([]pilorama.Node, error) {
 	ctx, span := tracing.StartSpanFromContext(ctx, "StorageEngine.TreeGetByPath",
diff --git a/pkg/local_object_storage/pilorama/boltdb.go b/pkg/local_object_storage/pilorama/boltdb.go
index 7bce1f340..a778434dd 100644
--- a/pkg/local_object_storage/pilorama/boltdb.go
+++ b/pkg/local_object_storage/pilorama/boltdb.go
@@ -558,6 +558,80 @@ func (t *boltForest) TreeApply(ctx context.Context, cnr cidSDK.ID, treeID string
 	return metaerr.Wrap(err)
 }
 
+func (t *boltForest) TreeApplyBatch(ctx context.Context, cnr cidSDK.ID, treeID string, m []*Move) error {
+	var (
+		startedAt = time.Now()
+		success   = false
+	)
+	defer func() {
+		t.metrics.AddMethodDuration("TreeApplyBatch", time.Since(startedAt), success)
+	}()
+
+	_, span := tracing.StartSpanFromContext(ctx, "boltForest.TreeApplyBatch",
+		trace.WithAttributes(
+			attribute.String("container_id", cnr.EncodeToString()),
+			attribute.String("tree_id", treeID),
+		),
+	)
+	defer span.End()
+
+	m, err := t.filterSeen(cnr, treeID, m)
+	if err != nil {
+		return err
+	}
+	if len(m) == 0 {
+		success = true
+		return nil
+	}
+
+	ch := make(chan error)
+	b := &batch{
+		forest:     t,
+		cid:        cnr,
+		treeID:     treeID,
+		results:    []chan<- error{ch},
+		operations: m,
+	}
+	go func() {
+		b.run()
+	}()
+	err = <-ch
+	success = err == nil
+	return metaerr.Wrap(err)
+}
+
+func (t *boltForest) filterSeen(cnr cidSDK.ID, treeID string, m []*Move) ([]*Move, error) {
+	t.modeMtx.RLock()
+	defer t.modeMtx.RUnlock()
+
+	if t.mode.NoMetabase() {
+		return nil, ErrDegradedMode
+	}
+
+	ops := make([]*Move, 0, len(m))
+	err := t.db.View(func(tx *bbolt.Tx) error {
+		treeRoot := tx.Bucket(bucketName(cnr, treeID))
+		if treeRoot == nil {
+			ops = m
+			return nil
+		}
+		b := treeRoot.Bucket(logBucket)
+		for _, op := range m {
+			var logKey [8]byte
+			binary.BigEndian.PutUint64(logKey[:], op.Time)
+			seen := b.Get(logKey[:]) != nil
+			if !seen {
+				ops = append(ops, op)
+			}
+		}
+		return nil
+	})
+	if err != nil {
+		return nil, metaerr.Wrap(err)
+	}
+	return ops, nil
+}
+
 // TreeApplyStream should be used with caution: this method locks other write transactions while `source` is not closed.
 func (t *boltForest) TreeApplyStream(ctx context.Context, cnr cidSDK.ID, treeID string, source <-chan *Move) error {
 	var (
diff --git a/pkg/local_object_storage/pilorama/forest.go b/pkg/local_object_storage/pilorama/forest.go
index bb5c22e51..374943745 100644
--- a/pkg/local_object_storage/pilorama/forest.go
+++ b/pkg/local_object_storage/pilorama/forest.go
@@ -111,6 +111,15 @@ func (f *memoryForest) TreeApply(_ context.Context, cnr cid.ID, treeID string, o
 	return s.Apply(op)
 }
 
+func (f *memoryForest) TreeApplyBatch(ctx context.Context, cnr cid.ID, treeID string, ops []*Move) error {
+	for _, op := range ops {
+		if err := f.TreeApply(ctx, cnr, treeID, op, true); err != nil {
+			return err
+		}
+	}
+	return nil
+}
+
 func (f *memoryForest) Init() error {
 	return nil
 }
diff --git a/pkg/local_object_storage/pilorama/interface.go b/pkg/local_object_storage/pilorama/interface.go
index 61a3849bf..b6ca246f2 100644
--- a/pkg/local_object_storage/pilorama/interface.go
+++ b/pkg/local_object_storage/pilorama/interface.go
@@ -21,6 +21,8 @@ type Forest interface {
 	// TreeApply applies replicated operation from another node.
 	// If background is true, TreeApply will first check whether an operation exists.
 	TreeApply(ctx context.Context, cnr cidSDK.ID, treeID string, m *Move, backgroundSync bool) error
+	// TreeApplyBatch applies replicated operations from another node.
+	TreeApplyBatch(ctx context.Context, cnr cidSDK.ID, treeID string, m []*Move) error
 	// TreeGetByPath returns all nodes corresponding to the path.
 	// The path is constructed by descending from the root using the values of the
 	// AttributeFilename in meta.
diff --git a/pkg/local_object_storage/shard/tree.go b/pkg/local_object_storage/shard/tree.go
index 26dc8ec1e..01a014cec 100644
--- a/pkg/local_object_storage/shard/tree.go
+++ b/pkg/local_object_storage/shard/tree.go
@@ -106,6 +106,33 @@ func (s *Shard) TreeApply(ctx context.Context, cnr cidSDK.ID, treeID string, m *
 	return s.pilorama.TreeApply(ctx, cnr, treeID, m, backgroundSync)
 }
 
+// TreeApplyBatch implements the pilorama.Forest interface.
+func (s *Shard) TreeApplyBatch(ctx context.Context, cnr cidSDK.ID, treeID string, m []*pilorama.Move) error {
+	ctx, span := tracing.StartSpanFromContext(ctx, "Shard.TreeApplyBatch",
+		trace.WithAttributes(
+			attribute.String("shard_id", s.ID().String()),
+			attribute.String("container_id", cnr.EncodeToString()),
+			attribute.String("tree_id", treeID),
+		),
+	)
+	defer span.End()
+
+	if s.pilorama == nil {
+		return ErrPiloramaDisabled
+	}
+
+	s.m.RLock()
+	defer s.m.RUnlock()
+
+	if s.info.Mode.ReadOnly() {
+		return ErrReadOnlyMode
+	}
+	if s.info.Mode.NoMetabase() {
+		return ErrDegradedMode
+	}
+	return s.pilorama.TreeApplyBatch(ctx, cnr, treeID, m)
+}
+
 // TreeGetByPath implements the pilorama.Forest interface.
 func (s *Shard) TreeGetByPath(ctx context.Context, cid cidSDK.ID, treeID string, attr string, path []string, latest bool) ([]pilorama.Node, error) {
 	ctx, span := tracing.StartSpanFromContext(ctx, "Shard.TreeGetByPath",
diff --git a/pkg/services/tree/options.go b/pkg/services/tree/options.go
index 1633ae557..a3f488009 100644
--- a/pkg/services/tree/options.go
+++ b/pkg/services/tree/options.go
@@ -41,6 +41,7 @@ type cfg struct {
 	replicatorTimeout         time.Duration
 	containerCacheSize        int
 	authorizedKeys            [][]byte
+	syncBatchSize             int
 
 	localOverrideStorage policyengine.LocalOverrideStorage
 	morphChainStorage    policyengine.MorphRuleChainStorageReader
@@ -113,6 +114,12 @@ func WithReplicationWorkerCount(n int) Option {
 	}
 }
 
+func WithSyncBatchSize(n int) Option {
+	return func(c *cfg) {
+		c.syncBatchSize = n
+	}
+}
+
 func WithContainerCacheSize(n int) Option {
 	return func(c *cfg) {
 		if n > 0 {
diff --git a/pkg/services/tree/replicator.go b/pkg/services/tree/replicator.go
index 95c8f8013..84e376cf7 100644
--- a/pkg/services/tree/replicator.go
+++ b/pkg/services/tree/replicator.go
@@ -40,6 +40,7 @@ const (
 	defaultReplicatorCapacity    = 64
 	defaultReplicatorWorkerCount = 64
 	defaultReplicatorSendTimeout = time.Second * 5
+	defaultSyncBatchSize         = 1000
 )
 
 func (s *Service) localReplicationWorker(ctx context.Context) {
diff --git a/pkg/services/tree/service.go b/pkg/services/tree/service.go
index 8097d545c..b63338d25 100644
--- a/pkg/services/tree/service.go
+++ b/pkg/services/tree/service.go
@@ -55,6 +55,7 @@ func New(opts ...Option) *Service {
 	s.replicatorChannelCapacity = defaultReplicatorCapacity
 	s.replicatorWorkerCount = defaultReplicatorWorkerCount
 	s.replicatorTimeout = defaultReplicatorSendTimeout
+	s.syncBatchSize = defaultSyncBatchSize
 	s.metrics = defaultMetricsRegister{}
 
 	for i := range opts {
diff --git a/pkg/services/tree/sync.go b/pkg/services/tree/sync.go
index ce1e72104..b93410616 100644
--- a/pkg/services/tree/sync.go
+++ b/pkg/services/tree/sync.go
@@ -177,37 +177,29 @@ func mergeOperationStreams(streams []chan *pilorama.Move, merged chan<- *piloram
 func (s *Service) applyOperationStream(ctx context.Context, cid cid.ID, treeID string,
 	operationStream <-chan *pilorama.Move,
 ) uint64 {
-	errGroup, _ := errgroup.WithContext(ctx)
-	const workersCount = 1024
-	errGroup.SetLimit(workersCount)
-
-	// We run TreeApply concurrently for the operation batch. Let's consider two operations
-	// in the batch m1 and m2 such that m1.Time < m2.Time. The engine may apply m2 and fail
-	// on m1. That means the service must start sync from m1.Time in the next iteration and
-	// this height is stored in unappliedOperationHeight.
-	var unappliedOperationHeight uint64 = math.MaxUint64
-	var heightMtx sync.Mutex
-
 	var prev *pilorama.Move
+	var batch []*pilorama.Move
 	for m := range operationStream {
 		// skip already applied op
 		if prev != nil && prev.Time == m.Time {
 			continue
 		}
 		prev = m
+		batch = append(batch, m)
 
-		errGroup.Go(func() error {
-			if err := s.forest.TreeApply(ctx, cid, treeID, m, true); err != nil {
-				heightMtx.Lock()
-				unappliedOperationHeight = min(unappliedOperationHeight, m.Time)
-				heightMtx.Unlock()
-				return err
+		if len(batch) == s.syncBatchSize {
+			if err := s.forest.TreeApplyBatch(ctx, cid, treeID, batch); err != nil {
+				return batch[0].Time
 			}
-			return nil
-		})
+			batch = batch[:0]
+		}
 	}
-	_ = errGroup.Wait()
-	return unappliedOperationHeight
+	if len(batch) > 0 {
+		if err := s.forest.TreeApplyBatch(ctx, cid, treeID, batch); err != nil {
+			return batch[0].Time
+		}
+	}
+	return math.MaxUint64
 }
 
 func (s *Service) startStream(ctx context.Context, cid cid.ID, treeID string,